Can I sync invoices created in QuickBooks with payments made in Stripe?

If you are on a paid plan using the Invoice Sync feature, we can sync invoices from Stripe to QuickBooks Online. With this feature, we create an invoice in QuickBooks Online every time an invoice is created in Stripe. Additionally, when a payment is received in Stripe against that invoice, we will create a payment receipt and apply it to that invoice. If invoicing through Stripe is an option, we recommend that to automate your system entirely.

That said, we have a few clients who want to match payments made in Stripe with Invoices created in Stripe.

Although payments can't be automatically applied to invoices created in QuickBooks Online, we can create payment receipts on a Stripe payment which you can manually match. You can easily match the two if the name/customer is the same between the invoice and payment receipt. If they're different, you may have a bit of extra work.